Publikace

2019

Chane A., Barbey C., Robert M., Merieau A., Konto-Ghiorghi Y., Beury-Cirou A., Feuilloley M., Pátek M., Gobert V., Latour X.: Biocontrol of soft rot: Confocal microscopy highlights virulent pectobacterial communication and its jamming by rhodococcal quorum-quenching. Mol Plant Microbe Interact. 32(7):802-812 (2019)

Dostálová H., Busche T., Holátko J., Rucká L, Štěpánek V., Barvík I., Nešvera J., Kalinowski J., Pátek M.: Overlap of promoter recognition specificity of stress response sigma factors SigD and SigH in Corynebacterium glutamicum ATCC 13032. Front Microbiol. 9:3287 (2019)

2018

Rädisch R., Chmátal M., Rucká L., Novotný P., Petrásková L., Halada P., Kotik M., Pátek M., Martínková L.: Overproduction and characterization of the first enzyme of a new aldoxime dehydratase family in Bradyrhizobium sp. Int J Biol Macromol. 115:746-753 (2018)

2017

Dostálová H., Holátko J., Busche T., Rucká L., Rapoport A., Halada P., Nešvera J., Kalinowski J., Pátek M.: Assignment of sigma factors of RNA polymerase to promoters in Corynebacterium glutamicum. AMB Express. 7(1):133 (2017)

Rucká L., Nešvera J., Pátek M.: Biodegradation of phenol and its derivatives by engineered bacteria: current knowledge and perspectives. World J Microbiol Biotechnol. 33(9):174 (2017)

Taniguchi H., Busche T., Patschkowski T., Niehaus K., Pátek M., Kalinowski J., Wendisch V.F.: Physiological roles of sigma factor SigD in Corynebacterium glutamicum. BMC Microbiol. 17(1):158 (2017)

Martínková L., Rucká L., Nešvera J., Pátek M.: Recent advances and challenges in the heterologous production of microbial nitrilases for biocatalytic applications. World J. Microbiol. Biotechnol. 33:8 (2017)

Bialevich V., Sinha D., Shamayeva K., Guzanova A., Csefalvay E., Carey J., Weiserova M., Ettrich R.: The helical domain of the EcoR124I motor subunit participates in ATPase activity and dsDNA translocation. Peer J. 5:e2887 (2017)

2016

Šilar R., Holátko J., Rucká L., Rapoport A., Dostálová H., Kadeřábková P., Nešvera J., Pátek M.: Use of in vitro transcription system for analysis of Corynebacterium glutamicum promoters recognized by two sigma factors. Curr. Microbiol. 73:401-408 (2016)

Veselá A. B., Rucká L. Kaplan O., Pelantová H., Nešvera J., Pátek M., Martínková L. Bringing nitrilase sequences from databases to life: the search for novel substrate specificities with a focus on dinitriles Appl. Microbiol. Biotechnol 100:2193-2202 (2016)

Pahlke J., Dostálová H., Holátko J., Degner U., Bott M., Pátek M. and Polen T.: Small 6C RNA of Corynebacterium glutamicum is involved in DNA damage response. RNA Biol. 13:848-860 (2016)

Tarnawski E.S., Rossi P., Brennerova M.V., Stavelova M., Holliger C.: Validation of an integrative methodology to assess and monitor reductive dechlorination of chlorinated ethenes in contaminated aquifers. Front. Environ. Sci. https://doi.org/10.3389/fenvs.2016.00007 (2016)

Praveckova M., Brennerova M.V., Holliger C., De Alencastro F., Rossi P.: Indirect evidence link PCB dehalogenation with Geobacteraceae in anaerobic sediment-free microcosms. Front. Microbiol. 7: 933 (2016)

2015

Praveckova M., Brennerova M.V., Cvancarova M., De Alencastro L.F., Holliger C., Rossi P.: Divergent PCB organohalide-respiring consortia enriched from the efflux channel of a former Delor manufacturer in Eastern Europe.  Ecotoxicol. Environ. Saf. 120:223-234 (2015)

Nešvera J., Rucká L., Pátek M.: Catabolism of phenol and its derivatives in bacteria: genes, their regulation and use in the biodegradation of toxic pollutants Adv. Appl. Microbiol. 93:107-160 (2015)

Csefalvay E., Lapkouski M., Guzanová  A., Csefalvay L., Baikova T., Shevelev I., Bialevich V., Shamayeva K., Janscak P., Kuta Smatanova I., Panjikar P., Carey J., Weiserová M., Ettrich R. Functional coupling of duplex translocation to DNA cleavage in a Type I restriction Enzyme:  PLoS One 10:e0128700 (2015)

2014

Szőköl J., Rucká L., Šimčíková M., Halada P., Nešvera J., Pátek M. Induction and carbon catabolite repression of phenol degradation genes in Rhodococcus erythropolis and Rhodococcus jostii Appl. Microbiol. Biotechnol.  98:8267–8279 (2014)

Rucká L., Volkova O., Pavlík A., Kaplan, O., Kracík M., Nešvera J., Martínková L., Pátek M.: Expression control of nitrile hydratase and amidase genes in Rhodococcus erythropolis and substrate specificities of the enzymes  Antonie van Leeuwenhoek 105:1179–1190 (2014)

Strnad H., Patek M., Fousek J., Szokol J., Ulbrich P., Nesvera J., Paces V., Vlcek C.: Genome sequence of Rhodococcus erythropolis strain CCM2595, a phenol derivatives degrading bacterium. Genome Announc. 2: e00208-14 (2014)

Sinha D., Shamayeva K., Ramasubramani V., Řeha D., Bialevich V., Khabiri M,. Guzanová A., Milbar N., Weiserová M., Csefalvay E., Carey J., Ettrich R.: Interdomain communication in the endonuclease/motor subunit of Type I restriction-modification enzyme EcoR124I. J. Mol. Model. 20:2334 (2014).

2013

Pátek M., Holátko J., Busche T., Kalinowski J. and Nešvera J.: Corynebacterium glutamicum promoters: A practical approach. Microb. Biotechnol. 6:103-117 (2013)

Pátek M., Nešvera J.: Promoters and Plasmid Vectors of Corynebacterium glutamicum, pp. 51-88 in Yukawa H., Inui M. (Eds): Microbiology Monographs: Biology and Biotechnology of Corynebacterium glutamicum. Springer-Verlag GmbH, Heidelberg, Germany (2013)

Zídková L., Szököl J., Rucká L., Pátek M., Nešvera J. : Bioremediation of phenol waste water using recombinant plasmid-carrying Rhodococcus erythropolis strains. Int. Biodeter. Bioremed. 84 179-184 (2013)

Kaplan O., Veselá A. B., Petříčková A., Pasquarelli F., Pičmanová M., Rinágelová A., Bhalla T. C., Pátek M., Martínková L.: A comparative study of nitrilases identified by genome mining. Molec. Biotechnol. 6:103-117 (2013)

Jelinek M., Kocourek T., Remsa J., Weiserová M., Jurek, K., Mikšovský, J., Strnad J., Galandáková, A., Ulrichová, J.: Antibacterial, cytotoxicity and physical properties of laser — silver doped hydroxyapatite layers. Mater. Sci. Eng. C Mater. Biol. Appl. 33:1242-1246 (2013)

2012

Holátko J., Šilar R., Rabatinová A., Šanderová H., Halada P., Nešvera J., Krásný L. and Pátek M.: Construction of in vitro transcription system for Corynebacterium glutamicum and its use in recognition of promoters of different classes Appl. Microbiol. Biotechnol. 96:521-529 (2012)

Nešvera J., Holátko J., Pátek M.: Analysis of Corynebacterium glutamicum promoters and their applications. Subcell. Biochem. 64: 203-221 (2012)

Busche T., Šilar R., Pičmanová M., Pátek M. and Kalinowski J.: Transcriptional regulation of the operon encoding stress-responsive ECF sigma factor SigH and its anti-sigma factor RshA, and control of its regulatory network in Corynebacterium glutamicum. BMC Genomics 13:445 (2012)

Veselá A. B., Pelantová H., Šulc M., Macková M., Lovecká P., Pasquarelli F., Pičmanová M., Pátek M., Bhalla T. C. and Martínková L.: Biotransformation of benzonitrile herbicides via the nitrile hydratase-amidase pathway in rhodococci. J.  Ind. Microbiol. Biotechnol. 39:1811–1819 (2012)

 2011

Pátek M., Nešvera J.: Sigma factors and promoters in Corynebacterium glutamicum. J. Biotechnol. 154: 101-113 (2011)

Nešvera J., Pátek M.: Tools for genetic manipulations in Corynebacterium glutamicum and their applications. Appl. Microbiol. Biotechnol. 90:1641–1654 (2011)

Jelínek M., Weiserová M., Kocourek T., Zezulová M., Strnad J.: Biomedical properties of laser prepared silver-doped hydroxyapatite. Laser Physics 21:1265-1269 (2011)

Korotkevych O., Josefiova J., Praveckova M., Cajthaml T., Stavelova M., Brennerova M.V.: Functional adaptation of microbial communities from jet fuel‐contaminated soil under bioremediation treatment: simulation of pollutant rebound. FEMS Microbiol. Ecol. 78:137‐149 (2011)

2010

Denina I., Paegle L., Prouza M., Holátko J., Pátek M., Nešvera J., Ruklisha M.: Factors enhancing L-valine production by growth limited L-isoleucine auxotrophic strain Corynebacterium glutamicum ΔilvA ΔpanB ilvNM13 (pECKAilvBNC) J.  Ind. Microbiol. Biotechnol. 37: 689-699 (2010)

Martínková L., Pátek M., Veselá A.B., Kaplan O., Uhnáková B., Nešvera J.: Catabolism of nitriles, pp. 171-206 in Alvarez H.M., Steinbüchel A. (Eds.): Biology of Rhodococcus, Microbiology Monographs series, Springer Verlag (2010)

2009

Holátko J., Elišáková V., Prouza M., Sobotka M., Nešvera J. and Pátek M.: Metabolic engineering of the L-valine biosynthesis pathway in Corynebacterium glutamicum using promoter activity modulation. J. Biotechnol. 139:203-210 (2009)

Hänßler E., Müller T., Palumbo K., Patek M., Brocker M., Krämer R., Burkovski A.:
A game with many players: control of gdh transcription in Corynebacterium glutamicum.
J. Biotechnol. 142:114-122 (2009)

Martínková L., Uhnáková B., Pátek M., Nešvera J., Křen V.: Biodegradation potential of the genus Rhodococcus. Environ. Int. 35:162-177 (2009)

Brennerova M.V. , Josefiova J., Brenner V., Pieper D.H., Junca H.: Metagenomics reveals diversity and abundance of meta‐cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air sparging bioremediation. Environ. Microbiol. 11: 2216–2227 (2009)

Kabelitz N., Machackova J., Imfeld G., Brennerova M., Pieper D.H., Heipieper H.J., Junca H.: Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX. Appl. Microbiol. Biotechnol. 82: 565–577 (2009)

2008

Zemanová M., Kadeřábková P., Pátek M., Knoppová M., Šilar R. and Nešvera J.: Chromosomally encoded small antisense RNA in Corynebacterium glutamicum. FEMS Microbiol. Lett. 279:195-201 (2008)

Nešvera J., Pátek M.: Plasmids and promoters of Corynebacteria and their applications,  pp. 113-154 in A. Burkovski (Ed.): Corynebacteria: Genomics and Molecular Biology. Caister Academic Press, Norfolk (UK) (2008)

Kubáč D., Kaplan O., Elišáková V., Pátek M., Vejvoda, V., Slámová K., Tóthová A., Lemaire M., Galienne E., Lutz-Wahl S., Fischer L., Kuzma M., Pelantová H., van Pelt S., Bolte J., Křen V., Martínková L.: Biotransformation of nitriles to amides using soluble and immobilized nitrile hydratase from Rhodococcus erythropolis A4. J. Mol. Catal. B-Enz 50:107-113 (2008)

2007

Pátek M.: Branched-Chain Amino Acids, pp. 129-162 in Wendisch V.F. (Ed.): Amino Acid Biosynthesis Pathways, Regulation and Metabolite Engineering Series: Microbiology Monographs , Vol. 5 (2007)

Veselý M., Knoppová M., Nešvera J., Pátek M.: Analysis of catRABC operon for catechol degradation from phenol-degrading Rhodococcus erythropolis. Appl. Microbiol. Biotechnol. 76:159-168 (2007)

Knoppová M., Phensaijai, M.  Veselý M.,  Zemanová  M., Nešvera J., Pátek M.: Plasmid vectors for testing in vivo promoter activities in Corynebacterium glutamicum and Rhodococccus erythropolis Curr. Microbiol. 55:234-239 (2007)

Vejvoda V., Šveda O., Kaplan O., Přikrylová V., Elišáková V., Himl M., Kubáč D., Pelantová H., Kuzma M., Křen V. Martínková L.: Biotransformation of heterocyclic dinitriles by Rhodococcus erythropolis A4 and fungal nitrilases. Biotechnol. Lett. 29:1119-1124 (2007)

Blombach B, Schreiner M E, Holatko J, Bartek T, Oldiges M, Eikmanns B J.: L-valine production with pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum. Appl. Environ. Microbiol. 73:2079-2084 (2007)

2006

Schreiner M. E., Riedel C., Holátko J., Pátek M., and Eikmanns B.J.: Pyruvate:quinone oxidoreductase in Corynebacterium glutamicum: molecular analysis of the pqo gene, significance of the enzyme, and phylogenetic aspects. J. Bacteriol. 188:1341-1350 (2006)

Hendrickx B., Junca H., Vosahlova J., Lindner A., Rüegg I., Bucheli‐Witschel M., Faber F., Egli T., Mau M., Schlömann M., Brennerova M., Brenner V., Pieper D.H., Top E., M., Dejonghe W.,

Bastiaens L. Springael D.: Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: Distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site. J. Microbiol. Methods 64:250‐265 (2006)

2005

Pátek M: Regulation of gene expression, pp. 81-98 in Eggeling L., Bott M. (Eds.): Handbook of Corynebacterium glutamicum, CRC Press (2005)

Elišáková V., Pátek M., Holátko J., Nešvera J., Leyval D., Goergen J.L., Delaunay S.: Feedback-resistant acetohydroxy acid synthase increases valine production in Corynebacterium glutamicum Appl. Environ. Microbiol. 71:207-213 (2005)

Hüser A.T., Chassagnole C., Lindley N.D., Merkamm M., Guyonvarch A., Elišáková V., Pátek M., Kalinowski J., Brune I., Pühler A., and Tauch A.: Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic fluxes analysis and genome-wide transcriptional profiling. Appl. Environ. Microbiol. 71:3255-3268 (2005)
Čejková A., Masák J., Jirků V., Veselý M., Pátek M., Nešvera J.: Potential of Rhodococcus erythropolis as a bioremediation organism. Word J. Microbiol. Biotechnol. 21:317-321 (2005)

Schreiner M.E., Fiur D., Holátko J., Pátek M., and Eikmanns B.J.: E1 enzyme of the pyruvate dehydrogenase complex in Corynebacterium glutamicum:  Molecular analysis of the gene and phylogenetic aspects. J. Bacteriol. 187:6005-6018 (2005)

Hendrickx B., Dejonghe W., Boënne W., Brennerova M., Cernik M., Lederer M., Bucheli‐Witschel M., Bastiaens L., Verstraete W., Top E.M., Diels L., Springael D.: Dynamics of an oligotrophic bacterial aquifer community during contact with a groundwater plume contaminated with benzene, toluene, ethylbenzene, and xylenes: an in situ mesocosm study. Appl. Environ. Microbiol. 71: 3815‐3825 (2005)

Patents

Holátko J., Elišáková, Prouza M., Nešvera J., Pátek M.: Promoter Modifications for Branched-Chain Amino Acid Production. European Patent Application EP 06010527.7, filed May 22, 2006

Pátek M., Elišáková V.: Feedback Resistant Acetohydroxy Acid Mutants. European Patent Application No. 03014640.1, filed June 26, 2003.

Kreutzer C., Hans S., Rieping M., Möckel B., Pfefferle W., Eggeling L., Sahm H., Pátek M.: L-lysine-producing corynebacteria and process for the preparation of L-lysineUS Patent No. US 6200785 B1 (2001).

Kreutzer C., Hans S., Rieping M., Möckel B., Pfefferle W., Eggeling L., Sahm H., Pátek M.: L-Lysin produzierende coryneforme Bakterien und Verfahren zur Herstellung von Lysin. European Patent No. E 1067193 A1 (2001).

Kreutzer C., Hans S., Rieping M., Möckel B., Pfefferle W., Eggeling L., Sahm H., Pátek M.: L-Lysin produzierende coryneforme Bakterien und Verfahren zur Herstellung von Lysin. German Patent No. DE 19931314 A1  (2001).